Source code for cleanlab.internal.outlier
# Copyright (C) 2017-2023 Cleanlab Inc.
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"""
Helper functions used internally for outlier detection tasks.
"""
import numpy as np
[docs]def transform_distances_to_scores(
avg_distances: np.ndarray, t: int, scaling_factor: float
) -> np.ndarray:
"""Returns an outlier score for each example based on its average distance to its k nearest neighbors.
The transformation of a distance, :math:`d` , to a score, :math:`o` , is based on the following formula:
.. math::
o = \\exp\\left(-dt\\right)
where :math:`t` scales the distance to a score in the range [0,1].
Parameters
----------
avg_distances : np.ndarray
An array of distances of shape ``(N)``, where N is the number of examples.
Each entry represents an example's average distance to its k nearest neighbors.
t : int
A sensitivity parameter that modulates the strength of the transformation from distances to scores.
Higher values of `t` result in more pronounced differentiation between the scores of examples
lying in the range [0,1].
scaling_factor : float
A scaling factor used to normalize the distances before they are converted into scores. A valid
scaling factor is any positive number. The choice of scaling factor should be based on the
distribution of distances between neighboring examples. A good rule of thumb is to set the
scaling factor to the median distance between neighboring examples. A lower scaling factor
results in more pronounced differentiation between the scores of examples lying in the range [0,1].
Returns
-------
ood_features_scores : np.ndarray
An array of outlier scores of shape ``(N,)`` for N examples.
Examples
--------
>>> import numpy as np
>>> from cleanlab.outlier import transform_distances_to_scores
>>> distances = np.array([[0.0, 0.1, 0.25],
... [0.15, 0.2, 0.3]])
>>> avg_distances = np.mean(distances, axis=1)
>>> transform_distances_to_scores(avg_distances, t=1, scaling_factor=1)
array([0.88988177, 0.80519832])
"""
# Map ood_features_scores to range 0-1 with 0 = most concerning
ood_features_scores: np.ndarray = np.exp(-1 * avg_distances / scaling_factor * t)
return ood_features_scores